SELECTED PUBLICATIONS

  HOME
  PUBLICATIONS
 PROJECTS
  COOPERATION
  TEACHING
  C.V.


JOURNAL PAPERS

  • Hefferan, M.P. – Kucharova, K. – Kinjoh, K. - Kakinohana, O. – Sekerkova, G. - Nakamura, S. - Fuchigami, T. - Tomori, Z. - Yaksh, T. – Kurtz, N. - Marsala, M,: Spinal astrocyte GluR1 overexpression following ischemic insult facilitates behavioral signs of spasticity and rigidity. Journal of Neuroscience. (2007) In Press.
  • Kakinohana, O. - Hefferan, M.P. - Nakamura, S. - Kakinohana, M. - Galik, J. - Tomori, Z. - Marsala, J. - Yaksh, T.L. - Marsala, M,: Development of GABA-sensitive spasticity and rigidity in rats after transient spinal cord ischemia: a qualitative and quantitative electrophysiological and histopathological study. Neuroscience 141 (2006) 1569–1583
  • Marek, J. - Demjénová, E. - Tomori, Z. - Janáček, J. - Zolotova, I. - Valle, F. - Favre, M. - Dietler, G.: Interactive measurement and characterization of DNA molecules by analysis of AFM images. Cytometry A. 63A (2), (2005), pp. 87-93.
  • Marsala, M. - Hefferan, M. P. - Kakinohana, O. - Nakamura, S. - Marsala, J. - Tomori, Z.: Measurement of peripheral muscle resistance in rats with chronic ischemia-induced paraplegia or morphine-induced rigidity using a semi-automated computer-controlled muscle resistance meter. Journal of Neurotrauma 22, No 11, (2005) 1348-1361.
  • Radochova, B. - Janáček, J. - Schwarzerová, K. - Demjénová,E. - Tomori,Z. - Karen, P. - Kubínová, L.: Analysis of endoplasmic reticulum of tobacco cells using confocal microscopy. Image Analysis and Stereology 24, (2005), 181-185.
  • Marsala, M. – Kakinohana, O. – Yaksh, T.L. – Tomori, Z. – Marsala, M. – Cizkova, D.: Spinal implantation of hNT neurons and neuronal precursors: graft survival and functional effects in rats with ischemic spastic paraplegia. European J. of Neuroscience 20, No 9, (2004) pp. 2401-2414.
  • Kakinohana, O. - Cizkova, D. - Tomori, Z. - Hedlund, E. – Marsala, S. - Isacson, O. – Marsala, M.: Region specific cell grafting into cervical and lumbar spinal cord in rat: a qualitative and quantitative stereological study. Experimental Neurology 190, No 1, (2004) pp 122-132.
  • Timko, M. - Koneracka, M. - Kopcansky, P. - Tomori, Z. - Vekas, L. - Jozefczak, A. - Skumiel, A. - Radenovic, A. - Dietler, G. - Bystrenova E. and Lita M.: Complex characterization of physiology based magnetic fluids. Indian Journal of Engineering & Material Sciences 11, (2004), pp.276-282.
  • Karen, P - Jirkovská, M, - Tomori, Z.- Demjénová, E. - Janáček, J. - Kubínova, L:. Three-dimensional computer reconstruction of large tissue volumes based on composing series of high-resolution confocal images by GlueMRC and LinkMRC software. Microscopy Research and Technique 62: (2003), pp. 415-422.
  • Tomori, Z. - Krekule, I - Kubínová, L: Disector program for unbiased estimation of particle number, numerical density and mean volume. Image Analysis and Stereology 20, (2001), pp.119-130.
  • Viglasky, V. – Antalík, M. – Bágeľova, J. – Tomori, Z. – Podhradský, D.: Heat-induced conformational transition of cytochrome c observed by temperature gradient gel electrophoresis at acidic pH. Electrophoresis 21, (2000), pp. 850-858.
  • Tomori, Z. - Matis, L. - Karen, P. - Kubínová, L. - Krekule, I.: STESYS for Windows: an improved software system for semiautomatic stereological measurements. Physiological Research 49, (2000), pp.695-701.
  • Tomori, Z. – Marcin, J. – Vilim, P.: Pyramidal seeded region growing algorithm and its use in image segmentation. Lecture Notes in Comuter Science 1689 (1999), pp. 395-402.
  • Gažova, Z. – Antalík, M. – Bágeľová, J. – Tomori, Z.: Effect of the ionic strength on the interfacial properties of cytochrome c. Biochem. Biophys. Acta 1432, (1999), pp. 82-91.
  • Gažova, Z. - Bágeľova, J - Antalik, M. - Tomori, Z.: The interfacial behavior of cytochrome c studied by pendant-drop technique. Biochemistry and Molecular Biology International. 46, No 2, (1998), pp. 391- 398.
  • Bágeľová, J. - Antalík, M. - Tomori, Z.: Effect of polyglutamate on the thermal stability of ferricytochrome c. Biochemistry and Molecular Biology International 43, No. 4, (1997), pp.891-900.
  • Tomori, Z.: Border detection of the object segmented by the „pyramid linking“ method. IEEE Transactions on Systems, Man and Cybernetics SMC-25, (1995), pp.176-181.
  • Jirák, D. – Kubínová, L. – Tomori, Z. – Hlinka, R. – Jirkovská, M. – Krekule, I.: Interactive visualization of a capilary bed. Physiological Research 46, (1997), p33.
  • Kubínová, L. - Krekule, I. - Indra, M. - Jirkovská, M. - Hach, P. - Antoš, K. - Ježek, B. - Jirák, D. - Opatrný, Z. - Tomori, Z.: Comparizon of ANALYZE and 3DVIEWNIX software systems applied to visualization and analysis of data captured by a confocal laser scanning microscope. Physiological Research 45, No 6, (1996), p38.


DOMESTIC JOURNALS (IN SLOVAK)

  • Marcin, J. – Ocelíková, E. - Zolotova, I. - Tomori, Z. - Klimešová, D. Číslicové spracovanie obrazov v biomedicíne pomocou voľne dostupných programov. Lékař a technika 32, (2001), č. 4, pp. 105 – 108.
  • Tomori, Z. - Vadasz, P.: Aplikácia metódy analýzy obrazu na vysokoteplotnom mikroskope LEITZ Wetzlar. Hutnícke listy č. 12, (1995), pp.22-23.
  • Gažová, Z. - Tomori, Z.: Meranie povrchového napätia metódou visiacej kvapky. Lékař a technika 20, (1989), pp. K21-K23.
  • Tomori, Z.: Využitie pyramidálnych reprezentácii obrazu pri identifikácii objektov. Elektrotechnický časopis 40, (1989), pp.479-482.
  • Tomori, Z. - Gálik, J. - Krekule, I.: Zber a spracovanie obrazovej informácie pomocou mikropočítača PMD-85 v poloautomatických a automatických zostavách. Lékař a technika 19, (1988), pp. 21-23.


CONFERENCE CONTRIBUTIONS, ABSTRACTS

  • Čížková, D., Tomori, Z., Čížek, M.: Stereological quantification of ependymal neural progenitors after spinal cord injury in rat. Proc. "Morphology 2006" - programme abstracts, Prague, Sept. 3-6, 2006.
  • Janáček, J. - Radochova, B. - Demjénová, E. - Schwarzerová, K. - Tomori, Z. - Karen, P. - Kubínová, L.: Analysis of endoplasmic reticulum by confocal microscopy. Proc. Prague Post Genome Technology Workshop, Prague, Czech Republic, June 6 - 7, (2005), pp. 22-23.
  • Janáček, J. - Radochová, B. - Demjénová, E. - Mao, X. W. - Archambeau, P. - Schwarzerová, K. - Tomori, Z. - Karen, P. - Kubínová, L.: Analysis of fiber-like structures using confocal microscopy. Proc. 9-th European Congress on Stereology and Image Analysis. Zakopane, Poland, May 10-13, (2005), pp. 79-85.
  • Tomori, Z. - Demjénová, E. - Mozeš, Š.: Semi-interactive segmentation algorithm in the villus optical density measurement. In 4-th Conference “Structure and Stability of Biomacromolecules”- Book of Contributions, Košice, Slovakia Sept. 12-14, (2005), pp.39-40.
  • Demjénová, E. - Janáček, J. - Zolotová, I. - Tomori, Z.: Active contours in segmentation of fiber like objects. Proc. 2-nd Slovakian – Hungarian Joint Symposium on Applied Machine Intelligence SAMI 2005, Herlany, January 21-22, (2005), pp.75-85.
  • Demjénová, E. - Zolotová, I. - Tomori, Z.: Interactive segmentation of fibre-like objects. 1-st Slovakian – Hungarian Joint Symposiumon Applied Machine Intelligence SAMI 2004, Herlany, January 16-17, (2004), pp. 259-268.
  • Kubínová, L. - Janáček, J. - Radochová, B. - Demjénová, E. – Tomori, Z.: Confocal stereology: efficient tool for quantitative evaluation of microscopical structure. Proc. Focus on Microscopy, Genoa, April 13-16, (2003), p.74.
  • Tomori, Z. - Marsala, M. - Kubinova, L.: Number of Surviving Cells Estimated by Stereological Image Analysis. Proc. “Structure and Stability of Biomacromolecules 2003”, Košice, Sept. 3-5, (2003), pp. 49-50.
  • Demjénová, E. - Marek, J. - Tomori, Z.: Interactive segmentation of fibre-like objects. Proc. “Structure and Stability of Biomacromolecules 2003”, Košice, Sept. 3-5, (2003), pp. 61-62.
  • Karen, P. - Jirkovská, M. - Tomori, Z. - Demjénová, E. – Janáček, J. - Kubínová, L.: 3-D reconstruction based on composing series of confocal images by GlueMRC and LinkMRC software. Proc. Focus on Microscopy, Genoa, April 13-16, (2003), p.64.
  • Albrechtová, J. - Janáček, J. - Tomori, Z. - Kubínová, L.: Unbiased estimation of anatomical characteristics of Norway spruce needle from thick transverse sections using confocal microscopy. Proc. 8th European Congress for Stereology and Image Analysis, Bordeaux, September 4 -7, (2001), pp.140-141.
  • Tomori, Z. - Demjénová, E. - Antalík, M.: Image analysis of DNA plasmids fragments using interactive “Snake” model. Proc. Structure and Stability of Biomacromolecules, Košice Sept. 12-14, (2001), pp.71-72.
  • Tomori, Z. – Marcin, J.: Post-segmentation algorithm for the interactive improvement of image segmentation results. EuroConference BIOSIGNAL 2000, Brno, Czech republic, June 21-23, (2000), pp.213-215
  • Tomori, Z. – Marcin, J.: Semi-interactive segmentation of biomedical images – science or charlatary? Proc. Int. Conference “Life Sciences 2000”, Gozd Martuljek, Sept. 29 – Oct 1. (2000), p.28.
  • Tomori, Z. – Marcin, J. – Nezkusil, J.: Segmentation of melanoma images and their integration into the system of virtual hospital. Proc. International. Symposium on Telemedicine and Teleeducation in Praxis “ISTEP 2000”, Košice, March 22-24, (2000), pp. 311-314, ISBN 80-88964-38-5.
  • Matis, L. – Tomori, Z. – Kubinova, L. – Karen, P. - Krekule, I: STESYS2: Module of ImageTool freeware supporting interactive stereological measurements. Proc. International Conference on Stereology, Spatial Statistics and Stochastic Geometry S4G’99, Prague, Czech Republic June 21-24, (1999), p. 309.
  • Interactive ridge tracking algorithm. Proc.4-th International Conference on Digital Signal Processing ( DSP’99), Herlany, Slovak Republic, Sept. 29-30, (1999), pp.147-150.
  • Vilim, P. – Zolotová, I. – Tomori, Z.: Combined segmentation method. Proc. 15-th Spring Conference on Computer Graphics, SCCG’99. Budmerice, Slovak Republic, April 28-30, (1999), pp.35-37.
  • Vilim, P. – Zolotová, I. – Tomori, Z.: Combination of Interactive Region Growing and Threshold-based Image Segmentation. In: Conference Posters, Spring Conference on Computer Graphics, SCCG 1999, Budmerice, April 28-May 1, (1999), Slovakia, pp. 35-37
  • Gažová, Z. – Antalík, M. – Bágeľová, J. - Tomori, Z.: Adsorption of cytochrom C on air/water interface: The relationship between molecular conformation and surface activity. Proc. „Structure and Stability of Proteins“, Košice, Slovakia, Sept. 9-10. (1999), PO 18.
  • Tomori, Z. - Marcin, J. - Zolotová, I. - Krekule, I.: Interactive segmentation of biomedical images. Proc. 14-th Biennial International Conference “BIOSIGNAL 98", Brno, Czech Republic, June 23-25, (1998), pp. 48-50.
  • Janáček, J. - Kubínova, L. - Jirkovská, M. - Tomori, Z. - Hlinka, R. - Krekule I.: Visualization of villous vessels in human placenta. Proc. 14-th Biennial International Conference “BIOSIGNAL 98", Brno, Czech Republic, June 23-25, (1998), pp. 92-93.
  • Hlinka, R. - Krekule, I. - Tomori, Z.: Software for the Volume Visualization in Windows 95/NT Environment Designed as a Plug-in Module of "ImageTool" Freeware. Proc. "Spring Conference on Computer Graphics 97 and its Applications", (ISBN 80-223-1176-6), Bratislava, June 5-8, (1997), pp.25-26.
  • Tomori, Z - Molitoris, J.: Analysis of Electrophoresis Gel using Plug-in Module for "ImageTool" Freeware. Proc. "Digital Signal Processing 97", Herlany, Sept.2-4, (1997), pp. 161-165
  • Tomori, Z. - Nezkusil, J. - Vaňko, M.: Automatic determination of electrophoresis fractions in „ELFO Imager“ system. Proc. 13-th Biennial International Conference „BIOSIGNAL 96“, Brno, Czech Republic, June 25-27, (1996), pp. 54-56.
  • Kubínová, L. - Karen, P. - Opatrny, Z. - Jirkovska, M. - Indra, M. - Tomori, Z.: Comparison of methods for measuring surface area of 3-D objects from a series of optical sections obtained by confocal microscopy. Proc. „3D imaging in microscopy“, Oxford, April 14 - 17, 1996.
  • Tomori, Z. - Gažová, Z.: Measurement of surface tension by the drop shape analysis using digital image processing - improvement of the pre-processing phase. Proc. 7-th International IMEKO TC-13 Conference „Model-Based Biomeasurements“, Stará Lesná, Slovakia, Sept.6-9, (1995), pp.142-145.
  • Tomori,Z. - Gažová, Z.: Drop shape analysis by digital image processing methods. Proc. "Image Processing and Neural Networks 93", May 19-20, (1993), Liptovský Mikulaš, Slovakia, pp.255-260.
  • Gažová, Z. - Tomori, Z. - Antalík, M.: Structure and conformational dynamics of biomacromolecules. In: The interfacial behaviour of sodium dodecyl sulphat and cytochrome c. Europhysics conference abstract 14H, (1990), pp.57-58.
  • Tomori, Z. - Gažová, Z.: Surface tension measurement by digital processing of pendant drop image - hierarchical approach. In: Biosignál 90. Zborník prednášok. DT ČSVTS, Brno, (1990), pp.81-83.
  • Gažová, Z. - Tomori, Z. - Antalík, M.: Pendant drop method for the measurement of the interface tension - cytochrome c study. In: Electrochemical approaches in molecular biology. Zborník prednášok, Brno, (1990), pp.15-16.

    •  

Last edited: 2007-10-19